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Before we start
Central Functions
Initialize
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ARCitect
Installation - Windows
Installation - macOS
Installation - Linux
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ARCmanager
What is the ARCmanager?
Connect to your DataHUB
View your ARCs
Create new ARCs
Add new studies and assays
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Create your ARC
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Annotate Data in your ARC
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Keep files from syncing to the DataHUB
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Events 2023
Nov: CEPLAS PhD Module
Oct: CSCS CEPLAS Start Your ARC
Sept: MibiNet CEPLAS Start Your ARC
July: RPTU Summer School on RDM
July: Data Steward Circle
May: CEPLAS Start Your ARC Series
Start Your ARC Series - Videos
April: MBS Onboarding
Events 2024
TRR175 Becoming FAIR
CEPLAS ARC Trainings – Spring 2024
MibiNet CEPLAS DataPLANT Tool-Workshops
TRR175 Tutzing Retreat
CEPLAS ARCify your research project
Frequently Asked Questions
last updated at 2023-01-27
About this guide
In this guide we focus on how to use the ARC Commander to create your ARC and structure, store and share your data.
Before we can start
☑️ You know how to use a command line
☑️ You have created an ARC before
☑️ The latest version of the ARC Commander is installed on your computer
☑️ You have a DataPLANT account
☑️ Your computer is linked to the DataHUB via personal access token
🚀 Voila! You are ready to follow these few steps to create a minimal ARC sharable via DataPLANT's DataHUB.
Two minutes to your ARC
# Create and navigate to your ARC folder
mkdir <path/to/YourARCFolder>
cd <path/to/YourARCFolder>
# Setup the ARC structure with one study and one assay
arc init -i <YourInvestigationID>
arc assay add -s <YourStudyID> -a <YourAssayID>
arc sync -f -r https://git.nfdi4plants.org/<YourUserName>/<YourARC> -m "initialize ARC structure"
💡 Make sure that no ARC exists at https://git.nfdi4plants.org/<YourUserName>/<YourARC>
. Otherwise you will sync to that ARC.
💡 The last command will prompt an Error ERROR: GIT: fatal: repository 'https://git.nfdi4plants.org/<YourUserName>/<YourARC>' not found
(Windows) or ERROR: GIT: fatal: couldn't find remote ref main
(macOS). Don't worry, the ARC is being created at that DataHUB during this step.
DataPLANT Support
Besides these technical solutions, DataPLANT supports you with community-engaged data stewardship. For further assistance, feel free to reach out via our
helpdesk
or by contacting us
directly
.