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ARC Guides
Reusing ISA Metadata
Git-powered Lab Organization
Git for Biologists
Managing Lab SOPs as a Living Knowledge Base
Install and Prepare Git
Setting Up an SOP Repository
Understanding Protocol Changes with git diff
Evolving Protocols Without Losing History
Collaboration and Governance of SOPs
Publication and Reproducibility
Writing SOPs in Markdown
Writing SOPs in Markdown
Basic Structure of a Protocol
Essential Markdown Elements
Tables, Checklists, and Warnings
Best Practices for Laboratory SOP Writing
Reviewing and Approving SOPs in Git
Reviewing and Approving SOPs in Git
The SOP Review Workflow
Pull Requests and Discussion
Approval and Release of SOPs
Governance Model for Laboratory SOPs
Git
Git
Git Installation
.gitignore: Keep files from syncing to the DataHUB
Git-LFS: Working with large data files
Migrating files to LFS
Selective sharing
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Git Tips & Troubleshooting
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CWL
workflow-collection
CWL Fragpipe
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CWL Introduction
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CWL Metadata
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Dev Containers with CWL
Recommendations for FAIR Data Analysis
WIP
From Script to CWL
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Step-by-step Example
DataHUB
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Git
Here we collect Git-related guides and topics.
