Check-point 3

✔︎ I’ve added experimental details from SOPs
✔︎ In addition to the raw data, my ARC now contains the annotated data analysis.
✔︎ Using a datamap I can point to the content of my result files.
The ARC now looks like this:
Directoryassays
DirectoryProteomics_DataAnalysis
- README.md
Directorydataset
DirectoryMSFraggerOutput
- combined_protein.csv
- combined_protein.fasta
- isa.assay.xlsx
Directoryprotocols
- AssayTemplate_Proteomics_DataAnalysis.json
DirectoryProteomics_MS
- README.md
Directorydataset
DirectoryMS_Raw
- WT_Cold_1_Measured.d
- WT_Cold_2_Measured.d
- WT_Cold_3_Measured.d
- WT_RT_1_Measured.d
- WT_RT_2_Measured.d
- WT_RT_3_Measured.d
- isa.assay.xlsx
Directoryprotocols
- AssayTemplate_Proteomics_MS.json
DirectorySugarMeasurement
- README.md
Directorydataset
- sugar_result.csv
- isa.assay.xlsx
Directoryprotocols
- sugar_extraction_protocol.md
DirectoryVisualization
- README.md
Directorydataset
- heatmap.svg
- isa.assay.xlsx
Directoryprotocols
- heatmap.py
- isa.investigation.xlsx
Directoryruns
- …
Directorystudies
DirectoryAthalianaColdStress
- README.md
- isa.study.xlsx
Directoryprotocols
- growth_protocol.md
- resources
Directoryworkflows
- …