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Check-point 3

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✔︎ I’ve added experimental details from SOPs
✔︎ In addition to the raw data, my ARC now contains the annotated data analysis.
✔︎ Using a datamap I can point to the content of my result files.

The ARC now looks like this:

  • Directoryassays
    • DirectoryProteomics_DataAnalysis
      • README.md
      • Directorydataset
        • DirectoryMSFraggerOutput
          • combined_protein.csv
        • combined_protein.fasta
      • isa.assay.xlsx
      • Directoryprotocols
        • AssayTemplate_Proteomics_DataAnalysis.json
    • DirectoryProteomics_MS
      • README.md
      • Directorydataset
        • DirectoryMS_Raw
          • WT_Cold_1_Measured.d
          • WT_Cold_2_Measured.d
          • WT_Cold_3_Measured.d
          • WT_RT_1_Measured.d
          • WT_RT_2_Measured.d
          • WT_RT_3_Measured.d
        • isa.assay.xlsx
      • Directoryprotocols
        • AssayTemplate_Proteomics_MS.json
    • DirectorySugarMeasurement
      • README.md
      • Directorydataset
        • sugar_result.csv
      • isa.assay.xlsx
      • Directoryprotocols
        • sugar_extraction_protocol.md
    • DirectoryVisualization
      • README.md
      • Directorydataset
        • heatmap.svg
      • isa.assay.xlsx
      • Directoryprotocols
        • heatmap.py
  • isa.investigation.xlsx
  • Directoryruns
  • Directorystudies
    • DirectoryAthalianaColdStress
      • README.md
      • isa.study.xlsx
      • Directoryprotocols
        • growth_protocol.md
      • resources
  • Directoryworkflows