Check-point 3

✔︎ I’ve added experimental details from SOPs
✔︎ In addition to the raw data, my ARC now contains the annotated data analysis.
✔︎ Using a datamap I can point to the content of my result files.

The ARC now looks like this:

• Directoryassays

  • DirectoryProteomics_DataAnalysis

    • README.md
    • Directorydataset

      • DirectoryMSFraggerOutput

        • combined_protein.csv
      • combined_protein.fasta
    • isa.assay.xlsx
    • Directoryprotocols

      • AssayTemplate_Proteomics_DataAnalysis.json
  • DirectoryProteomics_MS

    • README.md
    • Directorydataset

      • DirectoryMS_Raw

        • WT_Cold_1_Measured.d
        • WT_Cold_2_Measured.d
        • WT_Cold_3_Measured.d
        • WT_RT_1_Measured.d
        • WT_RT_2_Measured.d
        • WT_RT_3_Measured.d
      • isa.assay.xlsx
    • Directoryprotocols

      • AssayTemplate_Proteomics_MS.json
  • DirectorySugarMeasurement

    • README.md
    • Directorydataset

      • sugar_result.csv
    • isa.assay.xlsx
    • Directoryprotocols

      • sugar_extraction_protocol.md
  • DirectoryVisualization

    • README.md
    • Directorydataset

      • heatmap.svg
    • isa.assay.xlsx
    • Directoryprotocols

      • heatmap.py
• isa.investigation.xlsx
• Directoryruns

  • …
• Directorystudies

  • DirectoryAthalianaColdStress

    • README.md
    • isa.study.xlsx
    • Directoryprotocols

      • growth_protocol.md
    • resources
• Directoryworkflows

  • …