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Getting Started
Create an ARC
Describe the investigation
Add a study
Add assay data
Add a datamap
Data analysis
Share your ARC
Complete
Core Concepts
Is My ARC Good Enough?
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ARC
Best Practices For Data Annotation
Optimizing ARC Integration
ISA
Guides
Annotate in Excel
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VSCode Extension
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Validate your ARC
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Publish your ARC
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External Data
CWL
Storing ARCs
Publication to ARC
Resources
DataPLAN
elab2ARC
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Using ARCs with Galaxy
Metadata Quiz
Git
Keep files from syncing to the DataHUB
Working with large data files
Selective sharing
Syncing recommendation
Git Troubleshooting & Tips
Working with branches
CWL
Computational Workflows
CWL Introduction
CWL Runner Installation
CWL Metadata
CWL Examples
Step by Step
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Fundamentals
Fundamentals
Data Management Plan
Data Publications
Data Sharing
Electronic Lab Notebooks (ELNs)
FAIR data principles
Metadata
Ontologies
Ontology Service Landscape
Persistent Identifiers
Public Data Repositories
Research Data Management
Version control & Git
ARCitect
ARCitect
Installation
Branches
Large File Storage (LFS)
ARC Validation
Continuous Quality Control (CQC) pipelines & ARC validation
Find and use ARC Validation Packages
DataHUB
General
DataPLANT Account
DataPLANT account
Navigation & Settings
Navigation
User settings
Projects
ARC panel
ARC settings
Personal Access Token (PAT)
Project Access Token
Working together
Working together
Inviting collaborators
ARC members and Investigation contacts
User groups
ARC files
Manage files in the DataHUB
Large File Storage (LFS)
ARC features
Commits
Fork an ARC
How to add a license to your ARC
Your ARC's wiki
Data Publications
Data publications
Submitting ARCs with ARChigator
Passing Continuous Quality Control
Use your DOIs
Track your publication status
ARC Commander
General
Setup
Installation of Git and Git LFS
Installing the ARC Commander
ARC Commander DataHUB access
Before we start
ARC Commander QuickStart
ARC Commander QuickStart (Experts)
Central Functions
Initialize an ARC
Clone an ARC from the DataHUB
Connect an ARC to the DataHUB
Sychronize an ARC
Config User
Working on an ARC branch
ISA metadata
Investigation
Study
Assay
Update ISA metadata
Export ARC metadata
Large File Storage (LFS)
Swate
General
Adding a Building Block
Annotation Table
Building Blocks
Context Menu
wip
File Picker
JSON import and export
How to contribute Swate templates
Templates
Term Search
Advanced Term Search
Top Level Metadata
ARCManager
ARCmanager manual
What is the ARCmanager?
Connect to your DataHUB
View ARCs
Create new ARCs
Add new studies and assays
Uploading files
Adding Metadata
Vault
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ARCitect QuickStart
ARCitect QuickStart Videos
Frequently Asked Questions
Swate QuickStart
Swate QuickStart Videos
Swate Walk-through
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Fundamentals
In this section we explore
fundamental
topics on research data management (RDM).