ARC Ecosystem Demo

"A FAIR RDM journey along a (mutable) data life cycle"

Dominik Brilhaus


https://rdmkit.elixir-europe.org, CC BY 4.0

Collect

Process (e.g. annotate)

Analyse

Weil, H.L., Schneider, K., et al. (2023), PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research. Plant J. https://doi.org/10.1111/tpj.16474

Preserve

adapted from Weil, H.L., Schneider, K., et al. (2023), PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research. Plant J. https://doi.org/10.1111/tpj.16474

Preserve and publish

Weil, H.L., Schneider, K., et al. (2023), PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research. Plant J. https://doi.org/10.1111/tpj.16474

Share and collaborate

Reuse

Weil, H.L., Schneider, K., et al. (2023), PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research. Plant J. https://doi.org/10.1111/tpj.16474

Mutable data life cycle

Weil, H.L., Schneider, K., et al. (2023), PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research. Plant J. https://doi.org/10.1111/tpj.16474

Plan (ARC scale)

Weil, H.L., Schneider, K., et al. (2023), PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research. Plant J. https://doi.org/10.1111/tpj.16474

Plan (proposal scale)

Zhou et al. (2023), DataPLAN: a web-based data management plan generator for the plant sciences, bioRxiv 2023.07.07.548147; doi: https://doi.org/10.1101/2023.07.07.548147

https://dmpg.nfdi4plants.org

Contributors

Slides presented here include contributions by

- create study folder - take a picture (add more demo pictures) - create assay folder - add fastq data

- annotate plant samples - annotate rnaseq extraction

- run fastqc - receive back results

1. Validation: CQC on each DataHUB commit 2. Publication: DOI

1. Validation: CQC on each DataHUB commit 2. Publication: DOI

- via ARC https://arcregistry.nfdi4plants.org/arcsearch - via ISA https://arcregistry.nfdi4plants.org/isasearch

- Invite other (demo) account - add notes from there

- **ARCitect**: Create empty ARC - description - author - first name - last name - email - **ARCitect**: Upload ARC to DataHUB - **DataHUB** - Discuss, collect meeting minutes in Wiki - design / plant investigation (datahub wiki, issues)